Datasets

Table of Contents

10x Genomics Data Repository

10x Genomics maintains a repository of publicly available datasets generated through three main platforms: Chromium, Visium, and Xenium. The repository includes Chromium single-cell molecular profiles, Visium spatial transcriptomics (ST) data, and Xenium single-cell spatial gene expression measurements.

All of Us

The All of Us dataset is a large, longitudinal U.S. health research resource that integrates clinical, behavioral, genomic, and wearable-device data from a diverse participant population.

Behavioral Risk Factor Surveillance System (BRFSS)

The Behavioral Risk Factor Surveillance System (BRFSS) was established in 1984 by the U.S. Centers for Disease Control and Prevention (CDC) to collect prevalence data regarding risk behaviors and preventive health practices among adult residents across all 50 states, the District of Columbia, and participating U.S. territories.

cBioPortal for Cancer Genomics

The cBioPortal for Cancer Genomics is an open-access, open-source platform for the interactive exploration of multidimensional cancer genomics datasets with an emphasis on multimodal cancer visualization.

DailyMed SPL Dataset

The DailyMed Full SPL Dataset refers to the downloadable full release of all drug labels in the United States.

Healthcare Cost and Utilization Project (HCUP)

The Healthcare Cost and Utilization Project (HCUP) is a family of databases, software tools, and related products developed through a Federal-State-Industry partnership and sponsored by the Agency for Healthcare Research and Quality (AHRQ).

MIMIC-IV

The Medical Information Mart for Intensive Care (MIMIC) is a publicly available repository of deidentified electronic health record (EHR) data from patients admitted to the Beth Israel Deaconess Medical Center (BIDMC) in Boston, Massachusetts.

National Plan and Provider Enumeration System (NPPES)

The National Plan and Provider Enumeration System (NPPES) is the national registry, operated by the Centers for Medicare & Medicaid Services (CMS), that assigns and maintains the National Provider Identifier (NPI) — the standard unique identifier for health care providers in the United States.

Pediatric Psychiatry Emergency Services (PediPES) at Hasbro Children’s

The Pediatric Psychiatry Emergency Services (PediPES) dataset consists of electronic health record (EHR) data for patients younger than 18 years old evaluated in the emergency department at Hasbro Children's Emergency Department in Providence, Rhode Island for psychiatric concerns.

Surveillance, Epidemiology, and End Results (SEER)

The Surveillance, Epidemiology, and End Results (SEER) Program provides information on cancer statistics in an effort to reduce the cancer burden among the U.S. population.

SyntheticMass

SyntheticMass is a Synthea-generated data set that contains realistic but fictional residents of the state of Massachusetts.

SyntheticRI 2026: Synthetic Healthcare Records for Rhode Island

The SyntheticRI 2026 datasets consist of patient-centric synthetic health records representing the population of Rhode Island.

Youth Risk Behavior Surveillance System (YRBSS)

The Youth Risk Behavior Surveillance System (YRBSS) was established in 1990 by the U.S. Centers for Disease Control and Prevention (CDC) to monitor priority health risk behaviors and experiences that contribute to death, disability, and social problems among youth and young adults in the United States.